Developing Different NPBTs, We’re Moving Forward

In general terms, New Plant-Breeding Techniques (NPBTs) (or gene editing) are methods that allow scientists to develop new plant varieties with desired traits, by modifying the seeds and plant cells’ DNA. As the process has only been developed in the last decade, the technique is still quite new and it has been continually evolving in recent years. However, in the CHIC project, we have been doing genome editing based on CRISPR-Cas.

For those not familiar with this concept, CRISPR, according to Wikipedia, is an acronym for ‘clustered regularly interspaced short palindromic repeats, which is a family of genes found in organisms such as bacteria. CRISPR is a technology that edits genes, or put it simply, it finds a specific bit of DNA inside a cell, at which point it alters that piece of DNA.

The CHIC project has developed four different methods in parallel to deliver CRISPR tools to chicory cells, which should have identical genetic outcomes. They differ only in the degree of “DNA invasiveness”, which is relevant in adopting these new technologies and their products by regulators and the general public. In the first four years of the project, three methods with varying degrees of DNA invasiveness have been fully implemented. The root chicory has been grown to maturity in which, using genome editing technique, the genes responsible for root bitter compounds have been eliminated. A patent application has been filed for this innovation.

Meanwhile, other partners involved in the project have worked on finding alternative genome editing molecules that may work even better in plant cells than CRISPR/Cas and a possible solution for self-incompatibility. This is the feature that chicory plants cannot be fertilized by their own pollen, as can be done in many other plant species, which poses a serious bottleneck in chicory variety improvement by plant breeding. The genes for self-incompatibility in chicory have been found and tested. Finally, additional work has been performed to improve the chicory genome sequence.

 

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Work Package Leader

Dr. Paul Bundock, WP1 Coordinator

Development of Four Conceptually Different NPBTs (New Plant Breeding Techniques)

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The Project’s Exploitation Strategy

The CHIC project aims to develop the technology behind its research for business purposes. As part of the project’s work, researchers are developing an exploitation strategy that’s built on two strong business cases for NPBT chicory-based dietary fibre and bioactive terpenes.

Improved inulin and terpene fractions are subjected to in vitro bioactivity studies. Safety evaluation and business cases for both lines are moving forward. Two types of NPBT chicory mutants have been generated and analysed, one type of mutations targeted to inulin breakdown genes and the other for germacrene synthase A.

The functionality of NPBT chicory lines were assessed in gut fermentation model, which measures the gas formation during the fermentation. These studies showed slightly lower gas formation in NPBT chicory compared to WT (wild type) chicory. Typical chicory sesquiterpene lactones (STLs) and chicory extracts have been studied for their bioactive potential, and interesting antimicrobial, antifungal, and anti-inflammatory activities have been reported. The results have recently been published.

Remarkably, the chicory extracts showed activity against antibiotic-resistant bacteria, and they also showed higher antibiofilm activity against the yeast Candida albicans than standard STLs. For commercial inulin processes, technical and economic feasibility showed efficiency for two different processes to yield both inulin and terpenes. The price of terpenes was calculated for both processes and they were shown to be competitive.

 

Check out Work Package 8 video –

Work Package Leader

Dr. Suvi Häkkinen, WP8 Coordinator

Commercial Exploitation of Chicory as a Multipurpose Crop

 

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NPBT for Dietary Inulin, How We Implement It?

Inulin is a dietary fiber with health-promoting characteristics mainly targeted at gut health. But what is gut health? “Gut health” describes the function and balance in the human’s gastrointestinal tract, ideally consisting of organs such as the esophagus, stomach, and intestines, in combination with the intestinal microbiota, that work together for digesting food. Inulin is a dietary fibre that cannot be degraded or digested by ourselves but can be used by ‘healthy’ micro-organisms to grow on. Why is it important to stimulate the growth of healthy microbiota in our gut? The composition of gut microbiota has broad impacts, including resistance to pathogens, maintaining the intestinal epithelium, metabolizing dietary and pharmaceutical compounds, controlling our immune function, and it even can influence our behaviour via the gut-brain connection.

On industrial scale, inulin is extracted from root chicory and used in many food products as low-calorie sweetener, fat-replacer and as pre-biotic (compounds in food that induce the growth or activity of beneficial microorganisms such as bacteria and fungi). The quality and the length of the inulin molecules determine the value and health-beneficial character of this dietary fiber. Using New Plant Breeding Techniques (NPBTs) could increase both the quality and the mean length of inulin.

During its research, within WP 2 we were able to produce chicory lines that are blocked in the breakdown of inulin under Autumn/ Winter conditions via CRIPSR’ed mutations in the genome, leading to high-quality inulin with a longer degree of polymerization.

In the industrial process, the very bitter taste from the chicory taproot is co-extracted with inulin. But this bitter taste hinders the broad food application of inulin. Therefore, additional purification steps are required which increase the cost of the process and thereby of inulin itself.

Within the CHIC project we could generate mutant chicory plants. The terpene synthesis genes are blocked using NPBT due to the small alteration made in the plant DNA using the CRISPR tools. This process reduced the presence of bitter compounds in the chicory mutant plants. We are now in the process of combining these two traits in one plant: reduction of the bitter compounds with high-quality inulin under Autumn/ Winter conditions.

 

Check out Work Package 2 video –

Work Package Leader

Dr. Ingrid M. van der Meer, WP2 Leader

Implementation of NPBT for Dietary Inulin

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Extracting Inulin From Chicory Is Not Easy

In the past, it was not easy to extract inulin from root chicory. The latex of chicory contains large amounts of sesquiterpene lactones, which interfere with the extraction of inulin. For the other part of this project, CHIC’s objective is to identify biological activities of interest for these sesquiterpene lactones and to hopefully increase their production by using new plant breeding technologies.

Scientists and researchers are finding other ways to solve this problem. Bioactivity assays were identified as having one promising sesquiterpene lactone with anti-inflammatory activity and extracts containing antimicrobial activity. This resulted in identifying responsible substances.

Using transcriptome data and the newly sequenced genome, candidate genes for the biosynthesis of the sesquiterpene lactones and the formation of the laticifers have been identified and have also been functionally characterized. More importantly, several chicory lines were produced using new plant breeding technologies. This resulted in some showing accumulations of sesquiterpene lactones with anti-inflammatory activity, while others have reduced laticifer and sesquiterpene lactone content, which could be useful for inulin extraction.

 

Check out Work Package 3 video –

Work Package Leader

Prof. Dr. Alain Tissier, WP3 Coordinator

Implementation of NPBT in Chicory for Bioactive Terpenes

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Measuring the Socio-economic and Environmental Impacts

With any project of this nature and size, researchers also evaluate the socio-economic and environmental impacts. Therefore, a socio-economic impact assessment and an environmental assessment of molecular breeding technologies and the whole value chain are continually being performed. In addition to these quantitative assessments, qualitative research on societal issues hindering or facilitating chicory innovation will be part of the assessment.

Within the socio-economic assessment, the impact of different NPBTs on economic and social indicators are quantified using GDP, production volume, growth, competitiveness, and employment indicators. The distribution of wealth and income between different sectors and regions within the EU and the global economy will also be assessed. The LCA provides information on different aspects like greenhouse gas emissions, primary energy demand, and land use of the new value chain developed in CHIC.

With broad input of all partners, concepts were defined that differ in aspects such as whether CRISPR edited chicory is regulated as GMO or not, whether it is grown in the open field or greenhouses, and what type of products are isolated from them. These concepts are evaluated for their socio-economic and environmental impacts. CRISPR edited chicory show positive effects on socio-economics and environmental impacts. With higher inulin content in the chicory roots or the enabling of the production of new health promoting ingredients such as sesquiterpene lactones, positive economic effects can be generated and GHG emissions as well as primary energy demand can be reduced compared to the reference inulin process.

 

Check out Work Package 5 video –

Work Package Leader

Maria Hingsamer, WP5 Coordinator

Socio-economic and Environmental Impacts on the Whole Value Chain

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Partners Continue and Extent Stakeholders Engagement

The engagement of stakeholders is an important part of this project to facilitate a responsible innovative process. The CHIC project researcher continue their fruitful exchange with the CHIC Stakeholder Advisory Group (SAG), with SAG members participating in project meetings and conference calls. There have been two large activities during this reporting period: the first of two planned EU-level Stakeholder Consultations and the second activity was the development and application of a Multi-Criteria Assessment (MCA) instrument.

The EU-level Stakeholder Consultation took place on 6 October 2021 and brought together 15 project members and 30 stakeholders from various areas, which are part of the regulation and use of New Genomic Techniques (NGTs) in Europe. The MCA was conducted via an online questionnaire to investigate stakeholder views on NGT related issues. It focused on what factors relevant for social acceptability of NGTs. The data collection ended on 7 November 2021 and delivered 38 complete questionnaires reflecting a return rate of ca. 40%.

 

Check out Work Package 6 video –

Work Package Leader

Dr. Armin Spök, WP6 Coordinator

Stakeholder Engagement

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Exciting and Fun Activities, What’s New?

The CHIC project continues to provide updates and organize fun activities for everyone. It is a way to share with you what is happening at the project. We continue to share with you updates through our social media postings and published news articles.  During the last 11 months, we are glad to share with you that Jill Scott and Marille Hahne continue to develop the artistic work “AFTERTASTE,” which is based on the health of the human olfaction and gustatory systems and the feedback between these systems and the content is based on the primary and secondary compounds found in the chicory root. Anna Dumitru and Alex May continue to work on its sculptural and bio-digital installation entitled “Biotechnology from the Blue Flower.” The art installations continue to progress forward, and we are looking forward to sharing these amazing artworks very soon.

Educational activities for high school students have started to get off the ground. MyCHICFarm, an augmented reality game, and CHIC-Bubbles, a virtual reality game have garnered positive feedback from the students so far. Some CHIC partners have visited schools in The Netherlands and Spain and we are looking to continue to share this amazing technology at several schools in Europe. CHIC Days, an organized event with different schools, is already on the way, and we plan to visit a few schools in the next few months. We will certainly share more about these events in the coming months so stay tuned.

 

Last year, some CHIC partners organized a few events, including “Capture the Future(s): OUR BIO-TECH PLANET. The Routes to Roots Networks and Beyond,” where CHIC artists showcased and discussed their work. This event explored interconnections between environmental, cultural, and social-political issues that shape our future. The CHIC project was also part of a cooking show where world-famous pastry chef, Jordi Boras of Spain, taught the audience how to make two ground-breaking inulin-based recipes, Chocolate Soufflé and Lemon Meringue Pie. The CHIC project also organized a webinar with a group of scientists and researchers along with artists Anna Dumitriu and Alex May. These artists discussed with CHIC partners its project called “Biotechnology from the Blue Flower” and also explored the methodologies of gene editing using the CRISPR technique.

 

Check out Work Package 7 video –

Work Package Leader

Macarena Sanz, WP7 Coordinator

Exploitation, Dissemination and Communication

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CHIC Days at Colegio Virgen de Europa in Spain

On 18 March 2022, the school Virgen de Europa with a capacity of more than 1500 students located in Boadilla del Monte, 25 km west of Madrid, Spain, hosted a special CHIC augmented reality (AR) and virtual reality (VR) demonstration. During the CHIC Days event, around 40 students in total, aged 16-18, from the Bachelor of Sciences and the Bachelor of Technology, were introduced to the CHIC project’s aims and objectives. For two hours, they had the opportunity to learn about New Plant Breeding Techniques using two different types of immersive technology games, augmented reality MyCHICFarm and virtual reality CHIC-Bubbles. The Interactive Systems Research Group (DEI-Lab) at UC3M in Spain developed both games and conducted the CHIC Days session.

MyCHICFarm is an AR game developed for the CHIC project. It allows students, and the young generation, to learn more about new genome editing techniques and, of course, to learn more about the CHIC project. The game allows users to grow chicory crops and make the most money by planting chicory using Microsoft’s Hololens. In short, a farmer (user) starts with a fixed amount of money to buy chicory seeds, plant them, grow them, collect them, and then sell them in the market. The price of the chicory crops fluctuates based on the quality of crops, which can be affected by unexpected events such as droughts, rain, and insects. The game also includes a way to utilize CRISPR/Cas technique on plant DNA. CHIC-Bubbles organize relevant topics related to the project in a VR hierarchical space or taxonomy. The VR world allows students to explore and acquire knowledge related to the NPBTs technology in a non-conventional and exciting way.

Students enjoyed dissecting the DNA in a lab using AR. They were able to play with plants’ DNA using this immersive technology that is not readily available everywhere. They certainly enjoyed the life-like experience of modifying a virtual chicory plant DNA with their own hands using Microsoft Hololens. At the same time, the CHIC-Bubbles game was also a ‘hit’ with the students. They found the game fun and useful, especially compared to the 2D presentation. They enjoyed playing the games that students had to ask them to give other students a chance.

 

 

 

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Regulatory Issues of NPBTs, What is the Process?

The process of New Plant Breeding Techniques (NPBTs), even though it’s been used for quite some time, is not widely accepted, especially among the general public. The CHIC project also focuses on assessing the technical, regulatory, and safety aspects of the four conceptional different new plant breeding methods used in the project, and the chicory plants and substances produced by those plants.

This part of the project is divided into five individual tasks:

Task 1 deals with the efficiency analysis of the four conceptional different NPBTs.

Task 2 focuses on the assessment of Off-targets in the genome-edited chicory plants, both tasks contribute to the technical assessment. During the reporting period a current guide RNA has been used to generate chicory plants which each of the conceptional different NPBTs, plants have been generated for all of them (stable, FLP-system, RNP, and Plasmid delivery). Additionally, also off-targets for the common guide RNA have been assessed and tested in first screens which need further validation.

Tasks 3 and 5 assess the regulatory aspects of NPBTs, due to the ECJ ruling the risk assessment of products derived by genome editing is currently the same as for GMOs in Europe but discussions are ongoing. Regulatory regimes are legislations all around the world that are being adapted to genome editing or novel legislations are being decreed. In many countries e.g. Russia and India, discussions are still ongoing and opinions are being collected in this task the first publication on this has been released recently.

Task 4 deals with the safety assessment of products derived by genome-edited chicory. During the current reporting period, terpene samples were tested for cytotoxicity using human intestinal epithelial cells. The work package has made good progress in the current reporting period which will be further improved in the next period.

 

Check out Work Package 4 video –

Work Package Leader

Dr. Thorben Sprink, WP4 Coordinator

Technical, Risk and Regulatory Assessment of NPBTs

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First Ever In Person Meeting with CHIC Partners in Quedlinburg

The pandemic has caused a lot of disruptions in the world. Most meetings and conferences were mostly held virtually. A lot of people miss the interactions they often have with their colleagues. But most CHIC project partners were finally able to meet each other again in person. Last November 2021, the CHIC project held its first-ever 2-day in-person general assembly in Quedlinburg, Germany since the pandemic began. There were a lot of familiar faces that roamed the meeting room and, of course, there were plenty of new faces as well who have joined the project at a later stage.

Dirk Bosch of Wageningen University, the CHIC project coordinator alongside Thorben Sprink of Julius Kühn-Institut (JKI), Work Package (WP) 4 leader, opened the general assembly with a huge welcome to the partners present as well as others who have joined online. It had been a long time since they last saw any of the partners, and they were glad to see some of them in person again.

Following the introductory session, each WP leader (8 in total) presented their progress report, followed by a 10 min discussion. Everyone really enjoyed the interactions and the lively discussions they had with each other, and there were a lot of questions from the partners. It was good to see everyone to be physically in each other’s presence and have a face-to-face discussion about the project’s progress. After a tasty German lunch, each partner attended at least one of the eight breakout sessions to further discuss the report, its findings, and future results.

After a successful first day, the partners and invited guests got together again for a nice guided city night tour of Quedlinburg. Situated in the northern part of Germany, Quedlinburg is known for its medieval streets lined with half-timbered houses. A spectacular Quedlinburg Castle sits atop a hill overlooking the city. A beautiful Romanesque-style Church of St. Servatius is located inside the castle. The church houses the tomb of the 10th-century German king Henry I. After a splendid tour of the city, the partners sat together for a wonderful dinner where they ate delicious local German cuisine at a famous local restaurant, Brauhaus Lüdde, with its historic private brewery and hotel. It was such a wonderful night of laughing, sharing stories, and just enjoying each other’s company.

The second day of the general assembly included members of the Stakeholder Advisory Group (SAG) where they had the chance to speak with CHIC partners to further discuss the project’s progress. The members were grateful to be present and learn more about the project from the partners. The Head of Institute at JKI, Dr. Ralf Wilhelm, shared the history of the institute and the kind of projects that they have been involved in in the past. The CHIC partners were certainly very grateful for organizing the event and its hospitality in hosting these amazing and talented plant researchers and scientists. The day was not complete without the special lecture from Prof. Dr. Jens Boch of Institut für Pflanzengenetik, where he discussed genome editing using TALENs.

After a prolonged period of uncertainties due to the pandemic, CHIC partners were glad to have met each other in person again as the project moves forward to its final year.

 

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Researchers develop chicory plants that contain medical compound: costunolide

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New plant breeding techniques (NPBTs) have a great future, according…

Meet Dr. Ingrid van der Meer, WP2 Coordinator

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